HG3LMAFXY_n02_LHY1_c24_b-2b.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	HG3LMAFXY_n02_LHY1_c24_b-2b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4951402
Sequences flagged as poor quality	0
Sequence length	76
%GC	26

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	3520	0.0	6.462993	70
GTAGGGA	1650	1.6370905E-11	6.363627	69
GCGTCGT	3715	0.0	6.3122387	69
GTCGTGG	780	2.5983062E-4	6.2819786	70
TGTAGGG	1955	0.0	6.2659755	68
GTCGTGT	2980	0.0	5.989924	69
GTGTAGG	2050	0.0	5.9756007	67
AGCGTCG	4030	0.0	5.905699	68
CGTGTAG	2330	0.0	5.858301	70
GAGCGTC	4435	0.0	5.760926	70
CGGAAGA	7870	0.0	5.7369676	69
AAGAGCG	5850	0.0	5.623867	70
GGAAGAG	7705	0.0	5.5872164	70
TCGGAAG	8175	0.0	5.394488	68
TCGTGTA	3385	0.0	5.3766537	69
TCGTGTT	1380	4.3597956E-6	5.3260255	70
AGAGCGT	4995	0.0	5.3252635	70
GAAGAGC	6795	0.0	5.150787	70