FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n01_WOX11_col_b-2b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n01_WOX11_col_b-2b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3267284
Sequences flagged as poor quality0
Sequence length76
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCACC3501.3614019E-510.99996870
CAGTCAC22850.08.27130970
CATCACG8503.919922E-98.23526970
AAGAGCC8201.5484875E-77.682903370
CCAGTCA24500.07.285691769
ACATCAC19750.06.91137170
TCCAGTC26250.06.79997969
ACTCCAG30600.06.405208669
GTCTGAA53900.06.298681769
CTCCAGT28600.06.241239568
TCTGAAC50600.06.22527770
GAACTCC36050.06.21357370
GTCACAT23250.06.172024369
CACGATC6250.0069729486.159981369
CGTCTGA54500.05.97245968
TCACGAT8902.2065072E-45.898858567
CTGAACT47500.05.74735170
ACGTCTG59800.05.618711567
TCACATC24400.05.594245470
AGTCACA27300.05.512803669
Produced by FastQC (version 0.11.5)