FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n01_TGA5_CS70000_f-2e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n01_TGA5_CS70000_f-2e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1097009
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCCGAT950.007210454418.42102845
AGGCTGT1401.8655973E-417.49997730
CCAGTCC2702.41198E-916.85183170
GAGCACC4000.016.62497970
GATCGGC1400.003753807414.99998170
CGGAAGC5950.012.9411670
GTCCCGC2601.17629024E-412.1153770
GTCCCGA3155.6467594E-511.11109666
AAGAGCC5158.138159E-910.87377370
CCGTCCC5854.7475623E-1010.76921770
TCACCCG10250.010.58535269
CCCGTCC6007.385097E-1010.49998670
CACCCGT10500.010.3333270
ACCCGTC8750.09.99998870
ATGCTGC2950.0045436419.4923781
CGTCCCG4905.657341E-69.28570269
TCCAGTC19700.07.994913669
TGAATGC3950.0054409737.97467346
AGTCACC14150.07.91518467
GTCACCC13350.07.602986368
Produced by FastQC (version 0.11.5)