FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n01_TGA5_CS70000_f-2c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n01_TGA5_CS70000_f-2c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1097009
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCCGAT950.007210454418.42102845
AGGCTGT1401.8655973E-417.49997730
CCAGTCC2702.41198E-916.85183170
GAGCACC4000.016.62497970
GATCGGC1400.003753807414.99998170
CGGAAGC5850.013.16237570
GTCCCGC2601.17629024E-412.1153770
CCGTCCC5904.5474735E-1111.27117270
GTCCCGA3206.628015E-510.93748566
AAGAGCC5209.462383E-910.769217570
CCCGTCC6058.5310603E-1010.4132170
TCACCCG10250.010.24388969
CACCCGT10500.09.99998770
ACCCGTC8800.09.94316970
ATGCTGC2950.0045436419.4923781
CGTCCCG4905.657341E-69.28570269
TCCAGTC19650.08.01525769
TGAATGC3950.0054409737.97467346
AGTCACC14100.07.69502567
GTCACCC13353.6379788E-127.34081468
Produced by FastQC (version 0.11.5)