FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n01_TGA5_7063_f-2e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n01_TGA5_7063_f-2e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1633813
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGG850.003790910120.5887342
CCAGTCC2950.020.1693670
GGGGGGA1000.00969243417.49988661
CTGAACG2009.969308E-615.74989770
GAGCACC4400.015.11353770
CGGAAGC5900.013.05076270
CCCCCAT2254.7509934E-412.4443642
AATCGGG2250.00670145310.88915241
TCGGAAC2953.8023505E-410.677896570
CTGAGTG2700.002184754510.3706256
CCGTACG10600.09.57540970
AAGAGCC8252.3646862E-119.33327270
CAACCTG4158.857279E-59.27733139
ACCGTAC13850.09.09741370
CCTGATC4351.4786267E-48.85078742
CACCGTA15500.08.58058969
TCACCGT19550.08.05621370
AGTCACC23850.07.924476670
GAAGCGC4000.00609494237.874948569
CGTAATG5351.5880592E-47.85065638
Produced by FastQC (version 0.11.5)