FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n01_TGA5_5784_f-2d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n01_TGA5_5784_f-2d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1309645
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCACA2102.652387E-413.33333465
AGTCCCA2350.009253575510.4255321
AAGAGCC5151.035618E-69.51456470
ATATCGG2950.00454800349.49152669
ACGAGTG6654.3783075E-99.47368470
CGGAAGC5058.2970455E-69.00990170
GAGCACC3150.0077996878.88888870
AGTCACG11400.08.59649169
CGAGTGG5754.6108325E-68.5217469
GTCACGA11250.08.40000170
TCCAGTC16500.08.27272770
CACGAGT8101.2561395E-77.777777769
CAGTCAC14050.07.7224269
CTCCAGT18650.07.506702469
GAGTGGA6201.0818755E-47.3387170
CCAGTCA14151.8189894E-127.17314568
ACTCCAG20550.07.153284569
CAAGAGC5600.00220943386.87570
TCTGAAC33100.06.767371769
GTCTGAA36250.06.758620770
Produced by FastQC (version 0.11.5)