FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n01_LHY1_col_b-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n01_LHY1_col_b-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163
Sequences flagged as poor quality0
Sequence length76
%GC28

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTTGCTGCACATGCTATAGAATAAAAATATCCAGTGCCTGCAGAAAC10.6134969325153374No Hit
TTTCACCTCAAATGCGGAAGTAAAAAGGATATATTGATATTTTTTTGAAT10.6134969325153374No Hit
TTCAAATGGGTCTATATATATATATATATATATATATTAATATAGAGTGT10.6134969325153374No Hit
ATACACAATGAGTATAATATCCATACAATCTTGCACTTATCGACAAATAT10.6134969325153374No Hit
CTCATAACATTTAATAGTTATAAGGTAAGTGTGTCAGAGATTAAAAGATT10.6134969325153374No Hit
TATTAAACAATCATAACATTCTTACGATAACCTGTCTTGTACAAGGACAA10.6134969325153374No Hit
GGTATACTCAAAGATATTCGTGAAAGGAGCTCGAGATATTTTTAACAAAA10.6134969325153374No Hit
ACAAAATTCCAAATTTATCTGTTTAAAATCTAAATGAACTTAACTAGCTA10.6134969325153374No Hit
AAAATAACTCTAATTCTTTTTTTATAATGATGATATTATTTTTCCGCAAA10.6134969325153374No Hit
TGAATTATCATTAATAGTGATATCTAATCAGTTAGAAAAATATATTAAAG10.6134969325153374No Hit
GGGTGTGATTTATCGTATTTTGCTTTGCCTCTGTGTGATTTTTGATGGCT10.6134969325153374No Hit
GTTGGAAAATATACTCTAAAATCGATCCAAAAATTAATTCAGTTTGATCT10.6134969325153374No Hit
AGTTTGTGGATTTAATTTAGTACCCCTAAATAAGTAAAAAAGAAAATGAT10.6134969325153374No Hit
ATTTATAGATGTTTTAATTTATCGATAAATTAATATTTATTAATTTATAC10.6134969325153374No Hit
AGGAAATCAGGAAAAAGAAATTATATTTACAGTTTTTAAAATAGCCTATG10.6134969325153374No Hit
AGTTGATGATTTGATTATTTTTCACTGGAAAGTATCTCATTAGGGTAACG10.6134969325153374No Hit
ATCCCAGTTGCCAAAAATATCAAAGACACGGGAAGAACGTACTGCAACAG10.6134969325153374No Hit
ATAAAAAAATCCTAGTGTCGCATACTGCAAATAACCAGTCAAATTAACTT10.6134969325153374No Hit
TTCAATTTGACTTTTAAATTAAAATATCTTACCAATTTTGATGTTCCACT10.6134969325153374No Hit
TTATCTCTACAAAATATTTATCAGCAAATTATTATTTCTCACACTTTAGA10.6134969325153374No Hit
CTCATACTAAGCATTTTCCCATATCTATGAACTATAATAATAGAAATTTA10.6134969325153374No Hit
TCAATCTTTTTAATTAATTACAAAAATTCCTATGCATTATTTTTTTCTAA10.6134969325153374No Hit
ACACCAACGAAGACGACAAGACTTGCCTGAACGACCAAGATCGGAAGAGC10.6134969325153374No Hit
AAATCAAAAAAATTATCAAAATATTTTTTTTGATCTATCTTTTTATATTG10.6134969325153374No Hit
TAATTTCCAAAATTTTCATTATTTTTGTAATGGCAATTGGAATGATATTA10.6134969325153374No Hit
ATATTTTGAGATATTTTGAGATATTTTGAGATATTATCAACATGTAAAAA10.6134969325153374No Hit
AACTACTCGAAAATACACAATATATATAAATATTTTGAAAATGTTTTACT10.6134969325153374No Hit
GTATCCCCATATAGATTGGAAATGTCTAATTTGAAAATAAAAAACATTCA10.6134969325153374No Hit
TATAGACCACTTTACAGATATTATTATGCATTTCTTTTTTTTCTCTCTTT10.6134969325153374No Hit
TCTTATCGGTAAATCGTAGTTTTCCCTTGCTGTCTCGGTATTATTGTCAA10.6134969325153374No Hit
TCTAGGTGACGTTAATATAGTCGACGTTAGTCCTATGGTAACGTAATGTC10.6134969325153374No Hit
GCATCTAAAGAAGAAATAGGAGTATTGATGGCTATGAATTTTGCGATTCT10.6134969325153374No Hit
GGCCGGCATTTCCTAAACTATTCAGAGCAGATGCATCCTGCGCCTGGTTG10.6134969325153374No Hit
TTATAATTTACAATCAATTCATTCAATATTTCCCTTTTTAGAAGACAAAT10.6134969325153374No Hit
CTCACTGATCAGATCTGTTTCAGATATTTTGATAAAAGAAATTTGGGTTG10.6134969325153374No Hit
TAAATAATGATTTTGATGGTTCAGTAAATTTACTTGAATATAAGTTTTAA10.6134969325153374No Hit
TATATATTTGTTGATAATTGCGCACTGAATGCATGTTTGCTCTCTGCGGG10.6134969325153374No Hit
TGATGCTAATAACGGTGGGGGTTTCTCTGTTCCTCGTTATTGCGCTGAGA10.6134969325153374No Hit
TAAAGTTTAGATATATTGCGATGTATTTTAAATCTAGTTATGATTGATAT10.6134969325153374No Hit
TAAACTTTATTTTCTTTATTCTTTTTGTATATTTTCGGTGATATTCAAGA10.6134969325153374No Hit
ATATTTGATCGCATCTTTTTTATTTAGTATATTCTTTTTTTGGTCATATT10.6134969325153374No Hit
TTTATAAGATTTAATTTGAATTAGTATTTTTTTCTTCAATCCTATTAAAT10.6134969325153374No Hit
CCATTATTTGGACCGAGAGAAATATATGAATTAAATGAACCGAAAACAGA10.6134969325153374No Hit
CATAAATATTAGTTATTTTGGTAAGTATGAAAGATAAATAATATATAAAC10.6134969325153374No Hit
GAAAAGAAGCGGACTATCAGCTTGAAGACAATCTATCAGACAAGATGATG10.6134969325153374No Hit
TTATTTACAAGAAATGTCATTGCCATTTATTATTTAGTTTTACAAAATTT10.6134969325153374No Hit
CCTAATCAATATAGATAATATCATCAAAATATATACAACTCACAGTTTAC10.6134969325153374No Hit
GTCTAGTCTTGTGAAGAGCGAGCTCAACACTTAAATGTCACTGAAATGAA10.6134969325153374No Hit
TTTCCCGGAACTGAAAAGTATCTGCAAGCTCCTATCATCCTAAAAGCATA10.6134969325153374No Hit
AGTCAGTTCCTTTGAAAATTGATGAAATTGTTTTGCCCAAAATAAAAATC10.6134969325153374No Hit
GTCAATATAGTAACCAGACGACATCTACCCCACAAAACATTATTGCCTTT10.6134969325153374No Hit
AGTAAGGTAGCACCGCAGATTCTAAGAGTTTTAATAAAAAAATCTATATT10.6134969325153374No Hit
ATTAAATATTTTGGTATAAAATCTTTAAAAATATTTTGGTATAAAATCTT10.6134969325153374No Hit
CTTAATAATTTCTCCAAGTTTCGATGTGGGATTTTCTTCATTAACACCCT10.6134969325153374No Hit
GACGTATTTAGCAAGCTAAAAAGGGGAGACAAAGAGAATGGAAGTGCAAG10.6134969325153374No Hit
CTCTTACATTTCTTGATTTTTCGAGCATGGTGTTTTACTGAGTTTGGATA10.6134969325153374No Hit
CTTGGAAAAATCATTAAGGGATTAAATCTATTCTTGTGAAGAGCGAATTC10.6134969325153374No Hit
TAATGTCATTGATTAGAAAATGCTTTTATATTATCATTATTTCATGTGTT10.6134969325153374No Hit
AGAAATACTGAATGCTTTAAGATTTAATATTAAACAGATATTAGTTAGAT10.6134969325153374No Hit
GGATCAATCAAATATTGCAAAGTCCCGGTATCTAGTACCAGTCAGATTTG10.6134969325153374No Hit
CAGGTTTGTGCTTCTTCAATCATGTATGAGTAATCCCCTTGTTGGGTTGA10.6134969325153374No Hit
AAACAATATTTTGCATTTTTTGGTGAAACCATAAAGATAGTATTTGTTGA10.6134969325153374No Hit
TTCACAATTTTTTTTTAAAAAAAATATTTACAAAATTTTCTTATTTGCTT10.6134969325153374No Hit
GTAGCGATTTTTTTTTGCAACAAAATTGTAAATTATTTTAAGCAATTTTA10.6134969325153374No Hit
TTCCGCAGAATCGTCAAATGATATTAAGTTTCCGTAGTAATTGTAAATTG10.6134969325153374No Hit
ATTAGAATTGTCTAATAGCAATTGTGTATTGAATTCACTTCAATACACAA10.6134969325153374No Hit
TATATAACCTATAGCAGATTTTAGCAAGATTGATGGATACTTTAGAATAT10.6134969325153374No Hit
CATAAATAACGTCTCCACTAATTGAATAAAATGAAATATTTAACGAATTA10.6134969325153374No Hit
AACCTGGGACATGCATGTAATTGTCATAACTCGGAAAAGTGATGGAAGCC10.6134969325153374No Hit
TTTATTGTTGGAAGATTGAATCTAACATTTTAAGTATCATTTTACAGGCA10.6134969325153374No Hit
TTTCAACGAGATAGTGCTTTTTCAACTCTCTCAAAATGGAATCTATTCCA10.6134969325153374No Hit
TGTGATTATATTTATTGGTGGACGAAAAAAAGGTTTCTTTATATTTTTGA10.6134969325153374No Hit
CTATATATGATCCGCCATGGACTCAGAGGCCGCTTTAAGCATGTTTGCAA10.6134969325153374No Hit
CAATAATTATTAAATTAAATATCAAAATAAATATATAGATTGCTATACAA10.6134969325153374No Hit
TACTCAATTTAAAAGAGAGTAAACAGAATTCCATACTCGATTTCAGAGAT10.6134969325153374No Hit
ATATATAGATTACTAGATAAATATCGTAATCAAGAATGTGACAAAACATC10.6134969325153374No Hit
TAATAAGGTAAGATAGTTTTCAATTATAATTGAACGAGTATATGTGAGGA10.6134969325153374No Hit
ATAAATATATCACCAAAAAATGTGACTATCTTGTAAGCACTGATTTATAT10.6134969325153374No Hit
TATTTGCGATGCTACACTGTTTGATACTTACTCAGGCCGTTAAAGGAGTT10.6134969325153374No Hit
ATTAGGTTCGATTTTTTCGAATTTCGGTTTGTTTGGATATAGATTCTAAT10.6134969325153374No Hit
AAAATACAACAAAATATCTAAAACTTTTTGGGAAATCTGTTAGAAGATTT10.6134969325153374No Hit
TTTGGGTTTAAATCTCCATGGAAGATATCATTTCCATGATGATACTCCAT10.6134969325153374No Hit
TTTTGCGGTCAAAGTCTAATTTCATAGTGATATAAATCTGAAGGAAGCAG10.6134969325153374No Hit
AAATGTGATCCACTAGCAGACAAAACATTACCTTCGTTTCGCCCTGTGAG10.6134969325153374No Hit
GATAGTAGTACATATAAAATAATATCATTAGAAATTAAGATATTCATAAA10.6134969325153374No Hit
CAAACGAGTAGGAAATATCCTTAAAAATCTTTAAAATAAATATTTATATA10.6134969325153374No Hit
CTAATAACTCTTTGTTTTTATGTTAAAGAAAAATTATGGATTTTGTGCTT10.6134969325153374No Hit
GCTGCTACACCGCTGCTCAATACCTTCGGGGATTACTCTATTACATAAGT10.6134969325153374No Hit
ATATGCGTTTTTAGTTTATATTGGATGGATTATTTTGAATGATGAATAAA10.6134969325153374No Hit
CACAAAATTTTATATATCTTATAAAAAGTAATTCTTTAAAACATTCTCAA10.6134969325153374No Hit
CTTATAGTTACGTTTAATATCTGTTTTTAAATAAATTAATCTAGTAATTT10.6134969325153374No Hit
ATAATAAATCCCGCAAAATAAACGGTTAAAGATCTCGCGGTACACTCTGT10.6134969325153374No Hit
ACTTGGAACTCTTATTTGTAAACACCAATTGTTGGTGATTACATAAAACA10.6134969325153374No Hit
AAAAGTTTATTCGAGTTTTCAAAACTACATATAGTAAATAGAATTATACT10.6134969325153374No Hit
TGTAAAATCTAAATTTTAACTACTCTTTTTAAATCCAAACTGACATATAA10.6134969325153374No Hit
TCATTAAGATATTAATCTAAATTTTTCCAAAACTAAGAAATTAATTAAAT10.6134969325153374No Hit
CTCTATTATCATGATATTTGGCAATATCTTTTTACGACATGTGGCATATA10.6134969325153374No Hit
AATTTATTAGGGTAGTAGTTAACAATATCTATGTTTAGGCAAGTAGTTAG10.6134969325153374No Hit
ATTAATTACAGTTGCAGCCCTAAACCACCCCCGAAATTTATGGTAATGGA10.6134969325153374No Hit
ACAAAAAAAGGTTTACACAAGTTTTTGTTTTTATGTTTCTGATTTGTGGT10.6134969325153374No Hit
TTCTGTTGACAATATTAGTGTTTTGCTTCTTGATCTTTAGTAGCTACTTA10.6134969325153374No Hit
ATAAATACAAAACAAATATTTACCTCTTAGTGATATCATTTTGATCCTCT10.6134969325153374No Hit
ATCATATAAATGTATATTTATGTTGAGTTTGTCAAAATATATTGATCAAA10.6134969325153374No Hit
AGAAAAGATGTCGGAATAGGATATTGACAAAGAAATAATCTAAAATATTG10.6134969325153374No Hit
CTATTTTTTTTTTGGCAGCCTGTAAAAGAAAAATTATAAATATTGCAACT10.6134969325153374No Hit
TATGAATCCGAGTCTTTATGAAATTCTTCGGAAATATTTTGGAATAGAGA10.6134969325153374No Hit
CGTAGTTAGATATGTTCTAATTGATTTTTCTTATCATTGTGATATATAAG10.6134969325153374No Hit
ATCATGGCCCTTGCGGATCGGATCATCCATATAATATACAAAAAGAAACT10.6134969325153374No Hit
TTTTGAAGTCCTTGATATGTTATAAGATATTTTAAAATATCAGAGTGTTG10.6134969325153374No Hit
AATAGATAAATATCAATATAGATATATTTATATTGCGTCCAATAGGATTT10.6134969325153374No Hit
CATGTTTTGTTTGTCTTTGTAGTTTGGTGGAGCTTTCAGTATTGGCTCCC10.6134969325153374No Hit
TAAATAATTCAACTTCAAAAAGCTTTTACTAAGTTGATTAATTATAATTT10.6134969325153374No Hit
AAAAATTAAACACATTTTACCACATTCCTCTTATCACTAGATAACAAAAA10.6134969325153374No Hit
ATACAAATTAAATGTTAAAATAAACTAGAGTAGAATTTCGTTATATTATC10.6134969325153374No Hit
TTACTAAGATCTACTTATATTTTCAAAAATGTCTACGTTAGATGTCATCA10.6134969325153374No Hit
TTCGAATCAAGTAATTATAGATATGGTTAGTTAAGATTAATTAGGATTCT10.6134969325153374No Hit
TAAATTGGTTACAAATATTAAATACAATTCAGTAAAAAGTTGAGAACGCT10.6134969325153374No Hit
AGAAACCATCTAAATAAATGTGAATTCCTTATAAACATAACTTAGTTCTA10.6134969325153374No Hit
TTAATGATATTTTTATAGATTCATATAGTTATGTGCATATTTATAAAAGC10.6134969325153374No Hit
TTATTATCTCTAGTCTAATATTTTGTCAGACAACAGATATTATTGTCCGG10.6134969325153374No Hit
GTAAATGTAGACATTAAAAATATTTACTCGAAAGAAAAATAGTACATTTC10.6134969325153374No Hit
TTCAGTGCTAAGAATAAATCTGAGAATGTTTGGCACAAAAGAGAAGACTT10.6134969325153374No Hit
AAATGTTTTTTTGTATATTTTGAGATTGTTAATGTGTAGTATTATGTAGT10.6134969325153374No Hit
ACTAAGATATTTTGCTAAGTCTTGAGTGGATCTACTATCACCAAGAGTTA10.6134969325153374No Hit
CAAGCTTAATATTTTAATATATCATATTAGATATTTTTGGTTTTGGTTTT10.6134969325153374No Hit
ATTTTTGAGATTCGTTTATCCAATATTATATTCAAATTGTAATCATCGTA10.6134969325153374No Hit
CCAAAGAATCAAATTTAATCTGAAAAAAGATTTTTCTATAATCTGAAAAA10.6134969325153374No Hit
TTGACTGCTACTTAGTATCCGCAATAGGTCTGAAAAAGTATCTAAAAATA10.6134969325153374No Hit
CGATAAAATTAGACATCAGTTAATTAGCGAGGTCCCTGCAAGTTCTAATT10.6134969325153374No Hit
CCAAACAATGGATTCAATAAGTTCTTGCCAATAACCACGCCAGCGGAATA10.6134969325153374No Hit
CCATTGGCTCTTTTCTCCAATGAATAAGGCAAGTAAGTGCCGAGAATCCT10.6134969325153374No Hit
TTCGTCGTCAAGAATCTTTAGCCGTCCTTGTGCATAACAAAGCCTAAATA10.6134969325153374No Hit
TTACAGCAAATATATATTTTTATTTTTTCATATACTTTTATTTGTCCTAA10.6134969325153374No Hit
GCTAATTCTCAAACCCCGTCCGTTTCCTTTATAGCAGTCGTAACTGGCCT10.6134969325153374No Hit
AATAGTTAGGGGTTGTAAGACTAGATAATAACTAAATAAAAAGAAAGCAA10.6134969325153374No Hit
ACTTAATAGGTATGACAAATTATGTATTTTAACCCAAGAAAAAACAAAGT10.6134969325153374No Hit
CTAGATATCCGAAATTTCGAATATCAGGATTTTTTTGTGATATTTGCGGA10.6134969325153374No Hit
AAATGCAGCAGATATAGCTTAAGGTTATACATGAGCTAAGTAATCTTAAC10.6134969325153374No Hit
CAACATCATCGTCTAAGAGATCTTTCAACAGATATTTCTCATGATAGGCA10.6134969325153374No Hit
GTTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGG10.6134969325153374No Hit
TTCTTTCCCTTATTAGATCCACGCTATACGACACCTCATTCTTCTTCTCC10.6134969325153374No Hit
AGATAGTTTTAAAACGTAACATATTTAGGGGTTAACTTAAGTAATGAGAT10.6134969325153374No Hit
TTTACTTGCATTAAATCATCCATTAATCTCACTCTTAACAAAATATTTTC10.6134969325153374No Hit
AGTCGAATCTTTCATATTCAAACAGATTTGCATACCAACATCTAGATATT10.6134969325153374No Hit
CAAATATCTAATTTTGAGACCAATAAAAAAAAAGGTTTCAGAAAGTTATT10.6134969325153374No Hit
AAGGATACAATTCTTACGCCTTTAAGATCCGGTTGCGGTGTAAGTTCTTA10.6134969325153374No Hit
TTCTTTATCACAGTACTAGATGCTCCATGAAGCTCTGCGTGTACATACCT10.6134969325153374No Hit
GAGCAAATTATTTCATTTTTTGTTTAAATCTGTTCAAATAATAGCTTTGT10.6134969325153374No Hit
TCTCTACTAGTGTATGTGATATATTAAAGAAAATATCTAAGTGACTAAAG10.6134969325153374No Hit
AAATATCTGTCACCAAACTCCCCCATACCAGGAATAACACGAAACTCATC10.6134969325153374No Hit
GTTTTGCTTAAATTTGTATTTATTCTTATTTGAAATTTAATTCTAATATG10.6134969325153374No Hit
AAATGTCTCCACAACACAGCATCTGGTCTTGAATGAGGACAATTATGCGC10.6134969325153374No Hit
CTTCAGATATTTTAGATCCAGTATACTCAAGACTAAAATATACCGTTGAA10.6134969325153374No Hit
GGCCACTGGATATACATCTGTTGAACAATCACAACCAGATTGGAGCGAAA10.6134969325153374No Hit
AAAGTTGTGTATCAATTACTAAATGTGTATATGATATAAGTAAAATGGTA10.6134969325153374No Hit
GCAGATTCTCAGGTATACACTAAAATTCTTCGTCGGTCTCAATCAGTCAA10.6134969325153374No Hit
CATATTTAGTTGTACTATTACTAAATTTATTTTAATATTACATGATTTTT10.6134969325153374No Hit
ATATAGTACTTAATGAATCTAATACGGAATATCTGATCCCAACCCGAAGA10.6134969325153374No Hit
TTTCGTTTAATAGATTCATCACGTATCTCTCACGTTATTCAATAAATATC10.6134969325153374No Hit
AATTCAATAATGTAACTAGTGACACATACCAACAAACGTTCACACAAGAT10.6134969325153374No Hit
ACAATTTTTTTATATCTAAAATATCTATCTCGGATATTATTACAGAAAGT10.6134969325153374No Hit
GGCTCTTTCGTTTTTAGCTCTTTTTCCAGTTTAGCTTCACGACTCTATTA10.6134969325153374No Hit
AAGCCAATGTAAGATATTATTGTGTATAATACGAGTTAAATAACTTTCAT10.6134969325153374No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers