[2023-06-03 13:52:06,729] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-06-03 13:52:06,729] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-06-03 13:52:06,730] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-06-03 13:52:06,732] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-06-03 13:52:06,732] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-06-03 13:52:06,732] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HG2FFAFX5/merged [2023-06-03 13:52:06,901] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-06-03 13:52:06,902] multiqc [INFO ] This is MultiQC v1.9 [2023-06-03 13:52:06,902] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HG2FFAFX5/merged [2023-06-03 13:52:06,902] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HG2FFAFX5/merged [2023-06-03 13:52:06,902] multiqc [INFO ] Template : default [2023-06-03 13:52:06,902] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-06-03 13:52:06,902] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HG2FFAFX5/merged [2023-06-03 13:52:06,902] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-06-03 13:52:06,902] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-34199860/tmpmz_0xfwp [2023-06-03 13:52:07,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTae1_fastqc.html [2023-06-03 13:52:07,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTae1_fastqc.html [2023-06-03 13:52:07,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-06-03 13:52:07,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-06-03 13:52:07,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTbe1_fastqc.html [2023-06-03 13:52:07,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTbe1_fastqc.html [2023-06-03 13:52:07,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTae2_fastqc.html [2023-06-03 13:52:07,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTae2_fastqc.html [2023-06-03 13:52:07,234] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTae1_fastqc.html [2023-06-03 13:52:07,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTae1_fastqc.html [2023-06-03 13:52:07,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTbe1_fastqc.html [2023-06-03 13:52:07,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTbe1_fastqc.html [2023-06-03 13:52:07,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTbe2_fastqc.html [2023-06-03 13:52:07,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTbe2_fastqc.html [2023-06-03 13:52:07,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTae3_fastqc.html [2023-06-03 13:52:07,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTae3_fastqc.html [2023-06-03 13:52:07,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTae2_fastqc.html [2023-06-03 13:52:07,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTae2_fastqc.html [2023-06-03 13:52:07,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_9120input_fastqc.html [2023-06-03 13:52:07,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_9120input_fastqc.html [2023-06-03 13:52:07,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTbe3_fastqc.html [2023-06-03 13:52:07,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTbe3_fastqc.html [2023-06-03 13:52:07,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTbe2_fastqc.html [2023-06-03 13:52:07,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTbe2_fastqc.html [2023-06-03 13:52:07,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_9120RuvA_fastqc.html [2023-06-03 13:52:07,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_9120RuvA_fastqc.html [2023-06-03 13:52:07,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_7797RuvA_fastqc.html [2023-06-03 13:52:07,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_7797RuvA_fastqc.html [2023-06-03 13:52:07,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTae3_fastqc.html [2023-06-03 13:52:07,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTae3_fastqc.html [2023-06-03 13:52:07,711] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTbe2_fastqc.html [2023-06-03 13:52:07,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTbe2_fastqc.html [2023-06-03 13:52:07,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_7797input_fastqc.html [2023-06-03 13:52:07,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_7797input_fastqc.html [2023-06-03 13:52:07,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_11758RuvA_fastqc.html [2023-06-03 13:52:07,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_11758RuvA_fastqc.html [2023-06-03 13:52:07,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTbe1_fastqc.html [2023-06-03 13:52:07,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTbe1_fastqc.html [2023-06-03 13:52:07,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_9120RuvA_fastqc.html [2023-06-03 13:52:07,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_9120RuvA_fastqc.html [2023-06-03 13:52:07,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_11758RuvA_fastqc.html [2023-06-03 13:52:07,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_11758RuvA_fastqc.html [2023-06-03 13:52:07,983] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_7797input_fastqc.html [2023-06-03 13:52:07,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_7797input_fastqc.html [2023-06-03 13:52:08,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTae1_fastqc.html [2023-06-03 13:52:08,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTae1_fastqc.html [2023-06-03 13:52:08,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_11758input_fastqc.html [2023-06-03 13:52:08,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_11758input_fastqc.html [2023-06-03 13:52:08,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_11758input_fastqc.html [2023-06-03 13:52:08,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_11758input_fastqc.html [2023-06-03 13:52:08,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTae3_fastqc.html [2023-06-03 13:52:08,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_ArcTae3_fastqc.html [2023-06-03 13:52:08,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTae3_fastqc.html [2023-06-03 13:52:08,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTae3_fastqc.html [2023-06-03 13:52:08,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTae1_fastqc.html [2023-06-03 13:52:08,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTae1_fastqc.html [2023-06-03 13:52:08,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTae2_fastqc.html [2023-06-03 13:52:08,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTae2_fastqc.html [2023-06-03 13:52:08,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTbe3_fastqc.html [2023-06-03 13:52:08,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTbe3_fastqc.html [2023-06-03 13:52:08,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_7797RuvA_fastqc.html [2023-06-03 13:52:08,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_7797RuvA_fastqc.html [2023-06-03 13:52:08,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTbe2_fastqc.html [2023-06-03 13:52:08,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTbe2_fastqc.html [2023-06-03 13:52:08,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_undetermined_fastqc.html [2023-06-03 13:52:08,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_undetermined_fastqc.html [2023-06-03 13:52:08,506] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_9120input_fastqc.html [2023-06-03 13:52:08,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_9120input_fastqc.html [2023-06-03 13:52:08,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTbe1_fastqc.html [2023-06-03 13:52:08,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTbe1_fastqc.html [2023-06-03 13:52:08,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTbe4_fastqc.html [2023-06-03 13:52:08,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_AbvTbe4_fastqc.html [2023-06-03 13:52:08,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTbe4_fastqc.html [2023-06-03 13:52:08,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_AbvTbe4_fastqc.html [2023-06-03 13:52:08,683] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n01_undetermined_fastqc.html [2023-06-03 13:52:08,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n01_undetermined_fastqc.html [2023-06-03 13:52:08,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTae2_fastqc.html [2023-06-03 13:52:08,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HG2FFAFX5_n02_ArcTae2_fastqc.html [2023-06-03 13:52:09,445] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-06-03 13:52:09,448] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-06-03 13:52:09,466] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 19 samples (table) [2023-06-03 13:52:09,467] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-06-03 13:52:09,477] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-06-03 13:52:09,483] multiqc [DEBUG ] No samples found: conpair [2023-06-03 13:52:09,489] multiqc [DEBUG ] No samples found: peddy [2023-06-03 13:52:09,494] multiqc [DEBUG ] No samples found: somalier [2023-06-03 13:52:09,499] multiqc [DEBUG ] No samples found: methylQA [2023-06-03 13:52:09,509] multiqc [DEBUG ] No samples found: mosdepth [2023-06-03 13:52:09,513] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-06-03 13:52:09,517] multiqc [DEBUG ] No samples found: qualimap [2023-06-03 13:52:09,522] multiqc [DEBUG ] No samples found: preseq [2023-06-03 13:52:09,527] multiqc [DEBUG ] No samples found: quast [2023-06-03 13:52:09,533] multiqc [DEBUG ] No samples found: qorts [2023-06-03 13:52:09,538] multiqc [DEBUG ] No samples found: rna_seqc [2023-06-03 13:52:09,544] multiqc [DEBUG ] No samples found: rockhopper [2023-06-03 13:52:09,549] multiqc [DEBUG ] No samples found: rsem [2023-06-03 13:52:09,561] multiqc [DEBUG ] No samples found: rseqc [2023-06-03 13:52:09,566] multiqc [DEBUG ] No samples found: busco [2023-06-03 13:52:09,571] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-06-03 13:52:09,576] multiqc [DEBUG ] No samples found: disambiguate [2023-06-03 13:52:09,582] multiqc [DEBUG ] No samples found: supernova [2023-06-03 13:52:09,596] multiqc [DEBUG ] No samples found: deeptools [2023-06-03 13:52:09,602] multiqc [DEBUG ] No samples found: sargasso [2023-06-03 13:52:09,607] multiqc [DEBUG ] No samples found: verifybamid [2023-06-03 13:52:09,612] multiqc [DEBUG ] No samples found: mirtrace [2023-06-03 13:52:09,617] multiqc [DEBUG ] No samples found: happy [2023-06-03 13:52:09,623] multiqc [DEBUG ] No samples found: mirtop [2023-06-03 13:52:09,629] multiqc [DEBUG ] No samples found: homer [2023-06-03 13:52:09,634] multiqc [DEBUG ] No samples found: macs2 [2023-06-03 13:52:09,640] multiqc [DEBUG ] No samples found: theta2 [2023-06-03 13:52:09,645] multiqc [DEBUG ] No samples found: snpeff [2023-06-03 13:52:09,653] multiqc [DEBUG ] No samples found: gatk [2023-06-03 13:52:09,657] multiqc [DEBUG ] No samples found: htseq [2023-06-03 13:52:09,663] multiqc [DEBUG ] No samples found: bcftools [2023-06-03 13:52:09,668] multiqc [DEBUG ] No samples found: featureCounts [2023-06-03 13:52:09,675] multiqc [DEBUG ] No samples found: fgbio [2023-06-03 13:52:09,688] multiqc [DEBUG ] No samples found: dragen [2023-06-03 13:52:09,694] multiqc [DEBUG ] No samples found: dedup [2023-06-03 13:52:09,698] multiqc [DEBUG ] No samples found: damageprofiler [2023-06-03 13:52:09,723] multiqc [DEBUG ] No samples found: biobambam2 [2023-06-03 13:52:09,728] multiqc [DEBUG ] No samples found: mtnucratio [2023-06-03 13:52:09,731] multiqc [DEBUG ] No samples found: picard [2023-06-03 13:52:09,736] multiqc [DEBUG ] No samples found: prokka [2023-06-03 13:52:09,741] multiqc [DEBUG ] No samples found: samblaster [2023-06-03 13:52:09,749] multiqc [DEBUG ] No samples found: samtools [2023-06-03 13:52:09,755] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-06-03 13:52:09,760] multiqc [DEBUG ] No samples found: bamtools [2023-06-03 13:52:09,765] multiqc [DEBUG ] No samples found: jellyfish [2023-06-03 13:52:09,773] multiqc [DEBUG ] No samples found: vcftools [2023-06-03 13:52:09,779] multiqc [DEBUG ] No samples found: longranger [2023-06-03 13:52:09,784] multiqc [DEBUG ] No samples found: stacks [2023-06-03 13:52:09,789] multiqc [DEBUG ] No samples found: varscan2 [2023-06-03 13:52:09,804] multiqc [DEBUG ] No samples found: bbmap [2023-06-03 13:52:09,809] multiqc [DEBUG ] No samples found: bismark [2023-06-03 13:52:09,815] multiqc [DEBUG ] No samples found: biscuit [2023-06-03 13:52:09,820] multiqc [DEBUG ] No samples found: hicexplorer [2023-06-03 13:52:09,825] multiqc [DEBUG ] No samples found: hicup [2023-06-03 13:52:09,830] multiqc [DEBUG ] No samples found: hicpro [2023-06-03 13:52:09,834] multiqc [DEBUG ] No samples found: salmon [2023-06-03 13:52:09,839] multiqc [DEBUG ] No samples found: kallisto [2023-06-03 13:52:09,844] multiqc [DEBUG ] No samples found: slamdunk [2023-06-03 13:52:09,849] multiqc [DEBUG ] No samples found: star [2023-06-03 13:52:09,854] multiqc [DEBUG ] No samples found: hisat2 [2023-06-03 13:52:09,859] multiqc [DEBUG ] No samples found: tophat [2023-06-03 13:52:09,864] multiqc [DEBUG ] No samples found: bowtie2 [2023-06-03 13:52:09,869] multiqc [DEBUG ] No samples found: bowtie1 [2023-06-03 13:52:09,873] multiqc [DEBUG ] No samples found: snpsplit [2023-06-03 13:52:09,878] multiqc [DEBUG ] No samples found: kat [2023-06-03 13:52:09,882] multiqc [DEBUG ] No samples found: leehom [2023-06-03 13:52:09,887] multiqc [DEBUG ] No samples found: adapterRemoval [2023-06-03 13:52:09,892] multiqc [DEBUG ] No samples found: clipandmerge [2023-06-03 13:52:09,897] multiqc [DEBUG ] No samples found: cutadapt [2023-06-03 13:52:09,902] multiqc [DEBUG ] No samples found: flexbar [2023-06-03 13:52:09,907] multiqc [DEBUG ] No samples found: kaiju [2023-06-03 13:52:09,912] multiqc [DEBUG ] No samples found: kraken [2023-06-03 13:52:09,917] multiqc [DEBUG ] No samples found: malt [2023-06-03 13:52:09,921] multiqc [DEBUG ] No samples found: trimmomatic [2023-06-03 13:52:09,926] multiqc [DEBUG ] No samples found: sickle [2023-06-03 13:52:09,931] multiqc [DEBUG ] No samples found: skewer [2023-06-03 13:52:09,935] multiqc [DEBUG ] No samples found: sortmerna [2023-06-03 13:52:09,940] multiqc [DEBUG ] No samples found: biobloomtools [2023-06-03 13:52:09,945] multiqc [DEBUG ] No samples found: fastq_screen [2023-06-03 13:52:09,949] multiqc [DEBUG ] No samples found: afterqc [2023-06-03 13:52:09,954] multiqc [DEBUG ] No samples found: fastp [2023-06-03 13:52:10,776] multiqc.modules.fastqc.fastqc [INFO ] Found 38 reports [2023-06-03 13:52:11,115] multiqc [DEBUG ] No samples found: pycoqc [2023-06-03 13:52:11,120] multiqc [DEBUG ] No samples found: minionqc [2023-06-03 13:52:11,125] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-06-03 13:52:11,132] multiqc [DEBUG ] No samples found: clusterflow [2023-06-03 13:52:11,137] multiqc [DEBUG ] No samples found: bcl2fastq [2023-06-03 13:52:11,143] multiqc [DEBUG ] No samples found: interop [2023-06-03 13:52:11,148] multiqc [DEBUG ] No samples found: ivar [2023-06-03 13:52:11,152] multiqc [DEBUG ] No samples found: flash [2023-06-03 13:52:11,159] multiqc [DEBUG ] No samples found: seqyclean [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-06-03 13:52:11,159] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-06-03 13:52:11,160] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-06-03 13:52:11,205] multiqc [INFO ] Compressing plot data [2023-06-03 13:52:11,845] multiqc [INFO ] Report : multiqc_report.html [2023-06-03 13:52:11,845] multiqc [INFO ] Data : multiqc_data [2023-06-03 13:52:11,845] multiqc [DEBUG ] Moving data file from '/state/partition1/job-34199860/tmpmz_0xfwp/multiqc_data' to '/scratch/gencore/logs/html/HG2FFAFX5/merged/multiqc_data' [2023-06-03 13:52:11,974] multiqc [INFO ] MultiQC complete