FastQCFastQC Report
Tue 4 Dec 2018
HG22CBGX9_n02_MT_30783.TR5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG22CBGX9_n02_MT_30783.TR5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18660725
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGCCG194400.029.876883145
CGATCTA35100.023.5420514
TGTCCTA105550.021.8382455
GTCCTAC120550.020.2637466
TCGTGTT175050.018.681574145
CCGTATA57300.018.222456145
TCCTACT135850.017.8218177
CTCTATT176750.017.80448145
CGGTGGG147200.017.487171145
CGGTGTC143300.017.3557072
TCTCGGG147850.017.116034145
GTAGATA251200.016.713135145
CTACTCT148850.016.654969
GTGTCCT144650.016.5865524
ATGTGTT170850.016.339725145
AGAGCGG186250.015.84518145
CCTACTC165900.015.24918
GCGGTGT202900.014.9453181
GGTGTCC170150.014.0591793
GGATCCT92000.014.02421954
Produced by FastQC (version 0.11.5)