FastQCFastQC Report
Tue 4 Dec 2018
HG22CBGX9_n01_MT_7920.TR4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG22CBGX9_n01_MT_7920.TR4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21362175
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGATG220550.032.54437145
CGTGCGT35600.023.6229638
TCGTGCG36500.023.2391057
TACTCGC93700.022.516514145
GGCTCGT43150.020.668344
AGCTCGC95350.020.529089
TGCCGTG55650.018.499966145
TGCGCGA42350.018.4882899
GAACGCT74650.018.258059
ACTAACC130650.018.2563067
CGCGTAA27850.017.1884731
ATGCCGG43900.017.175783145
TGTCGAG31900.016.137975
CTAACCA147900.016.127028
CGAGGGA122850.015.75668
GAGCACC148100.015.371715145
CCGACAT40450.015.2411921
TTGAACG89200.015.1985857
CTCCGAC79750.015.0971841
TACGACT23550.015.0864646
Produced by FastQC (version 0.11.5)