FastQCFastQC Report
Tue 4 Dec 2018
HG22CBGX9_n01_MT_7651.TR4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG22CBGX9_n01_MT_7651.TR4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16172811
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA36700.022.5200719
CAACCGA57400.021.8535984
CCAACCG51300.021.0600283
GGCTCGT28400.020.169614
CGTGCGT27650.019.9273458
TCGTGCG29400.019.4809787
TTCGCAC28750.018.9127398
AACCGAG65300.018.7655335
AGCTCGC76150.018.6602369
GAGCTCG74750.018.6217738
ACCGAGG64000.018.2405246
GAACGCT57200.017.8712149
GTGCGCG47150.017.8364038
CATTATG162150.016.766975145
CGAGGGA90800.016.4479738
ACTAACC97150.016.1191437
ATGTCCG31400.015.9334896
AGGCGTA38600.015.7769498
GAGCACC120050.015.520702145
ATTATCG37550.015.446156145
Produced by FastQC (version 0.11.5)