FastQCFastQC Report
Tue 4 Dec 2018
HG22CBGX9_n01_MT_30783.TR4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG22CBGX9_n01_MT_30783.TR4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17983446
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACTCGC53250.015.248873145
CTCGATG129100.014.544971145
TATGCCG230350.010.764088145
CTCGTAT259600.010.612514145
TCGTATG273150.010.3249445145
GTATGCC260350.010.303469145
CGTATGC261350.010.06986145
GGGATAG119700.09.9976561
CCGGGAA82250.09.6998541
TCTCGTA277800.09.499669145
ATCTCGT296000.09.405435145
ACACGTA52300.09.287791145
GGGGAAT165750.09.2766411
GATCTCG364300.09.055065145
CCGGGAT51350.09.0395741
TTACTCG557500.08.986126145
ACTCGAT481750.08.879113145
TCGATCT386500.08.741295145
ATTACTC670250.08.6643305145
TACTCGA512450.08.573545145
Produced by FastQC (version 0.11.5)