FastQCFastQC Report
Thu 17 Jan 2019
HFYHHAFXY_n02_C24SPL9_C24_B_e-1d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFYHHAFXY_n02_C24SPL9_C24_B_e-1d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437076
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCCCCT150.00222387870.000867
CCCGGCT207.922678E-570.000839
CGTTGCG401.0659278E-861.24369420
GGGGCCG352.9714465E-760.00068333
GCGCACT308.370869E-658.33469
CGCGCCC252.3892571E-456.000645
ACGGGGC252.3906083E-455.9942321
GGCCCGT452.698107E-854.44506535
GGCATAC452.698107E-854.44506529
AGGCAGG608.367351E-1152.50660747
CGGCCCG407.4729905E-752.50060334
GCACGAC200.006948854352.5006037
CGCGACT200.006948854352.50060341
TGACGCG200.006948854352.50060311
GGCCCGG200.006948854352.5006037
ATCCGGG200.006948854352.50060333
TGGGGGC407.4729905E-752.50060331
GGGCCCT407.4729905E-752.50060368
GTGCCGA608.367351E-1152.50060340
TCGGGCC200.00695199952.4945954
Produced by FastQC (version 0.11.5)