FastQCFastQC Report
Thu 17 Jan 2019
HFYHHAFXY_n01_C24SPL9_C24_B_e-1d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFYHHAFXY_n01_C24SPL9_C24_B_e-1d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437076
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACGCG207.923514E-569.9993118
GGGTGCG352.971883E-759.9994161
CGCGGCT352.971883E-759.9994150
ACGCGCA252.3895083E-455.99944720
AGGGCGC200.006946295552.505492
TCCGCGA200.00694943952.4994827
GTCTGCG200.00694943952.4994825
TTAGCCC407.4741E-752.4994824
CGCGAGT200.00694943952.4994846
GCCGACT200.00694943952.4994832
CGCGCAT352.0854546E-549.99950821
TGCGCCG352.0854546E-549.99950830
GGGCGCT305.8723544E-446.6715473
GCCGCCT451.6834911E-646.6662113
CGCCTGC451.6834911E-646.6662115
GCCCCGT305.8756676E-446.66620620
GCGCGTA305.8756676E-446.66620663
GCGCATC305.8756676E-446.66620623
CTGCGCG305.8756676E-446.66620661
ACGGCGC604.9294613E-946.66620628
Produced by FastQC (version 0.11.5)