FastQCFastQC Report
Thu 17 Jan 2019
HFYHHAFXY_n01_C24SPL9_C24_B_e-1c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFYHHAFXY_n01_C24SPL9_C24_B_e-1c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences837468
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGGGC1000.059.50319347
CCGCGCG650.059.23041537
GCGCACT601.8189894E-1258.332987
CGCGCCC750.055.99966455
GCGCTGA850.053.52909563
CGCCCGC1100.050.91182750
GCCTGGC352.087061E-549.99970251
CGCCTGT1200.049.58303534
GGCTCAC850.049.41147243
CCTTCGC1000.048.99970660
TGCCGGG1150.048.6982746
GTGGCCC651.8553692E-1048.4612511
CCGCCTG800.048.12471414
GGTAGGG950.047.894454
CCGGGCT1250.047.6025648
TGCGCGC451.68531E-646.6663914
TCGCGCC900.046.6663954
TGCCCGC604.9385562E-946.66638611
TGCGCGG305.878659E-446.66638629
TAGGGGG751.4551915E-1146.66638624
Produced by FastQC (version 0.11.5)