FastQCFastQC Report
Thu 21 Feb 2019
HFWYWAFXY_n01_ColLHY_F1a_B_f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFWYWAFXY_n01_ColLHY_F1a_B_f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences241990
Sequences flagged as poor quality0
Sequence length76
%GC30

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGCGC150.002222854669.9993741
CGCCCCC305.870412E-446.6662521
GGTCCTG350.001253859639.99964535
CCTCGGT500.007199610627.9997542
CTCGGTA500.007199610627.9997543
CCAGTCA850.003782443220.58805326
TCCAGTC900.005265339319.44427325
CTGAACT1300.00228391616.15370419
AACATCA1550.00735275413.54826715
Produced by FastQC (version 0.11.5)