FastQCFastQC Report
Thu 21 Feb 2019
HFWYWAFXY_n01_ColCAMTA1_F1b_B_f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFWYWAFXY_n01_ColCAMTA1_F1b_B_f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences274894
Sequences flagged as poor quality0
Sequence length76
%GC36

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCCAGG200.00694643952.521
ACCGCTC1551.8189894E-1229.3548432
TCCTGTG500.007200977327.99999857
CCGCTCA1801.0913936E-1125.27777933
CGCTCAT1801.0913936E-1125.27777934
TCACCGC1551.2787496E-924.83870930
TATCTCG851.3054826E-424.70588341
AGTCACC1905.5842975E-1022.10526328
CAGTCAC1905.5842975E-1022.10526327
CACCGCT1905.5842975E-1022.10526331
GTCACCG1755.2095857E-922.029
CCAGTCA1957.712515E-1021.53846226
GTATGCC1003.9231373E-421.047
TCCAGTC2051.4406396E-920.48780425
TCTCGTA1107.457346E-419.0909143
TCGTATG1501.4897269E-518.66666645
GCTCATT2508.56744E-1018.19999935
ATCTCGT1401.8591681E-417.50000242
GGCTTGT1000.00967218217.54
CTCCAGT2451.3154931E-817.14285724
Produced by FastQC (version 0.11.5)