FastQCFastQC Report
Thu 21 Feb 2019
HFWYWAFXY_n01_ColCAMTA1_C24_B_f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFWYWAFXY_n01_ColCAMTA1_C24_B_f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences866879
Sequences flagged as poor quality0
Sequence length76
%GC36

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2100.033.33330545
CGAGGTC604.983318E-429.16664340
GTATGCC3050.026.3934244
CGCTCAT4200.025.83331131
CGTATGC2850.025.78945243
TGCCGTC2050.025.60973547
CCGCTCA4550.023.84613430
ACCGCTC4300.023.60463129
ATGCCGT2250.023.33331546
CACCGCT4700.021.59572628
GCCGTCT2001.0677468E-920.9999848
TATCTCG4300.019.53486638
TCACCGC5700.018.42103827
ATCTCGT4450.018.08987239
TCGTATG4450.018.08987242
GCTCATT5900.017.20337532
CTCGTAT4250.016.47057541
TCTCGTA4300.016.27905740
CTCATTA7100.016.26759333
GTCACCG6900.015.72462526
Produced by FastQC (version 0.11.5)