HFWHCBGXY_n01_shoot21.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFWHCBGXY_n01_shoot21.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21585339
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGATCTCGTATGC	98513	0.4563884773827272	TruSeq Adapter, Index 21 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	13395	59.203964	46
CGTATGC	13415	59.116936	44
ATGCCGT	14240	55.78873	47
TCGTATG	14980	52.87307	43
GTATGCC	15190	52.369724	45
TGCCGTC	15700	50.46687	48
GCCGTCT	16140	48.87412	49
CTCGTAT	17185	43.198433	42
CGTTTCG	18880	42.02034	33
GTTTCGA	21660	35.819122	34
GATCTCG	20005	35.698833	39
GTCACGT	23000	34.778572	29
CACGTTT	23150	34.40392	31
TTCGATC	21015	34.15239	36
TCTCGTA	21570	33.964333	41
TTTCGAT	22835	33.531227	35
CCGTCTT	24000	33.49464	50
ATCTCGT	21795	33.02193	40
ACGTTTC	24820	32.118694	32
AGTCACG	24970	32.02004	28