HFWHCBGXY_n01_shoot19.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFWHCBGXY_n01_shoot19.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24916610
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAAATCTCGTATGC	172507	0.6923373604996828	TruSeq Adapter, Index 19 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	22035	60.720703	44
TATGCCG	22430	59.790977	46
ATGCCGT	23250	57.124924	47
GTATGCC	24080	55.99933	45
TCGTATG	24035	55.363113	43
TGCCGTC	23910	54.874657	48
GCCGTCT	25305	51.047302	49
CTCGTAT	27640	47.688625	42
ACGTGAA	34045	43.47823	32
AATCTCG	31230	42.741455	39
CGTGAAA	34900	42.343365	33
ATCTCGT	31865	41.732895	40
CACGTGA	36255	40.71925	31
TCTCGTA	32730	40.35943	41
AAAAGGG	25960	39.850033	70
GTCACGT	37700	39.46298	29
TCACGTG	37955	38.89411	30
CCGTCTT	35150	37.535965	50
AGTCACG	40080	37.231815	28
CTGCTTG	35440	36.37898	57