HFWHCBGXY_n01_shoot17.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFWHCBGXY_n01_shoot17.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29036331
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGAGATCTCGTATGC	160773	0.5536959886564181	TruSeq Adapter, Index 3 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	20760	60.6544	46
CGTATGC	21365	59.28194	44
ATGCCGT	22210	56.710083	47
GTATGCC	22495	56.241383	45
TCGTATG	23370	54.182343	43
GCCGTCT	24760	50.502094	49
TGCCGTC	25050	50.25265	48
CTCGTAT	25145	48.96749	42
ACGTAGA	32360	39.412838	32
TCTCGTA	31230	39.3619	41
CCGTCTT	32265	39.1997	50
CGTAGAG	32735	38.92986	33
TCACGTA	33640	37.99369	30
GATCTCG	32250	37.894466	39
ATCTCGT	33755	36.12988	40
GTCACGT	35780	35.896286	29
CTGCTTG	35130	35.62412	57
AAAAGGG	25495	35.47045	70
AGTCACG	38755	33.013313	28
TGAAAAA	40505	31.674688	62