HFWHCBGXY_n01_shoot06.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFWHCBGXY_n01_shoot06.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20786680
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC	185836	0.8940148210296209	TruSeq Adapter, Index 12 (100% over 50bp)
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTATA	30530	0.14687290130025574	No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATA	27723	0.13336906134120502	No Hit
TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA	21471	0.10329210821545336	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	22450	63.899357	46
CGTATGC	23010	62.405365	44
ATGCCGT	23165	61.24633	47
GTATGCC	23920	60.411655	45
TCGTATG	24065	59.744408	43
GCCGTCT	24240	57.187607	49
CTCGTAT	24555	54.849	42
TGCCGTC	27255	51.67036	48
CCGTCTT	29425	47.574272	50
TCTCGTA	29405	45.828987	41
GTCACCT	33785	45.361355	29
GTAATCT	30160	45.351887	37
AAAAGGG	23750	44.884132	70
TGTAATC	31655	43.752563	36
TTGTAAT	34925	43.62587	35
CTGCTTG	31610	43.443604	57
AGTCACC	35905	43.120483	28
TAATCTC	32740	41.745255	38
CCTTGTA	36940	41.682434	33
ATCTCGT	33030	40.961037	40