HFWHCBGXY_n01_shoot03.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFWHCBGXY_n01_shoot03.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22863540
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC	118094	0.5165166898914166	TruSeq Adapter, Index 5 (100% over 50bp)
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTATA	29875	0.1306665546980039	No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATA	26498	0.1158963135192538	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATGTCGTATGC	24203	0.10585849785291343	TruSeq Adapter, Index 5 (98% over 50bp)
TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA	22902	0.10016821542070914	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	17815	61.822193	46
CGTATGC	17965	61.52096	44
ATGCCGT	18350	58.951584	47
GTATGCC	19445	57.43191	45
TCGTATG	19050	56.015507	43
GCCGTCT	19985	52.009644	49
TGCCGTC	22045	48.102005	48
CTCGTAT	18515	47.674923	42
CACAGTG	29250	43.484123	33
CACACAG	30245	42.35232	31
ACACAGT	30370	42.110313	32
GATCTCG	22085	39.976227	39
CCGTCTT	26560	39.85897	50
GTCACAC	32270	39.56177	29
AAAAGGG	22665	38.61773	70
AGTGATC	24335	38.49869	36
CAGTGAT	32140	38.452095	35
ACAGTGA	32665	38.391666	34
TCTCGTA	23325	37.710663	41
GTGATCT	24895	36.39426	37