HFWHCBGXY_n01_shoot02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFWHCBGXY_n01_shoot02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23429570
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	178435	0.7615803448377413	TruSeq Adapter, Index 4 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	23085	60.776722	46
CGTATGC	23180	60.74017	44
ATGCCGT	24225	57.87305	47
TCGTATG	24825	56.830135	43
GTATGCC	24945	56.37183	45
TGCCGTC	25125	55.535336	48
GCCGTCT	26265	52.938465	49
CTCGTAT	26820	50.33447	42
ACTGACC	32540	43.725338	32
AATCTCG	30890	43.019142	39
ATCTCGT	31200	42.634403	40
TCTCGTA	31685	42.277386	41
CACTGAC	34860	41.09408	31
CCGTCTT	34280	40.969208	50
AAAAGGG	26035	39.291496	70
CTGCTTG	36470	37.97125	57
GACCAAT	37425	37.044987	35
TGAAAAA	39670	36.011322	62
TCACTGA	40375	35.54901	30
GTCACTG	40865	35.387108	29