HFW2LAFX2_n02_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFW2LAFX2_n02_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9679904
Sequences flagged as poor quality	0
Sequence length	110
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	638791	6.599146024588673	No Hit
TGCCGCTATTTCTCTGGGTACCTCTGCATGATTCTCGCTATTATTCCAAC	494859	5.11223045187225	No Hit
TGCCGCTATTTCTCTGGGTACCCTACGTACGTTCTCGCTATTATTCCAAC	486196	5.022735762668721	No Hit
TGCCGCTATTTCTCTGGGTACCGCGTATAGCTTCTCGCTATTATTCCAAC	284599	2.940101472080715	No Hit
TGCCGCTATTTCTCTGGGTACCGTAATCGTGTTCTCGCTATTATTCCAAC	173977	1.7973008823227998	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGTAAATTTTATTAAGGTTTC	16242	0.16779092024053133	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11585	0.11968093898451886	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATGGTTA	172440	97.755424	104
CCGCTAT	195320	91.63421	3
AAGCAGT	39820	90.934235	1
GCCGCTA	199000	90.63238	2
TTTCTCT	195010	90.35283	9
CTATTTC	197045	89.939514	6
GCTATTT	199335	89.312294	5
TGCCGCT	201550	89.12796	1
ATTTCTC	199105	88.68649	8
AGCAGTG	41150	87.521774	2
TATTTCT	210920	83.889305	7
GCAGTGG	46965	76.538574	3
CAGTGGT	47860	74.84122	4
GGTATCA	47875	74.668594	8
GTATCAA	48100	74.18638	9
GCCGCGA	1770	73.96482	2
GTGGTAT	49010	73.25483	6
AGTGGTA	49100	73.1561	5
TGGTATC	50300	71.442474	7
CCGCTAG	1425	66.848854	3