FastQCFastQC Report
Mon 10 Oct 2022
HFTY3DMXY_n01_Ele.CA1100L25.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFTY3DMXY_n01_Ele.CA1100L25.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83749005
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCGTTACATCTCGTAT2686840.32082052795731725TruSeq Adapter, Index 20 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCGTTACATCGCGTAT1341670.1602013062722357TruSeq Adapter, Index 20 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)