HFNNGBGX2_n01_4s-52.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFNNGBGX2_n01_4s-52.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13458380
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	101880	0.7570004710819579	TruSeq Adapter, Index 6 (100% over 63bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	13490	61.297035	42
TCGTATG	13880	61.16536	43
TATGCCG	14130	59.98641	46
TATCTCG	13970	59.3168	39
GTCACGC	14860	58.086185	29
AGTCACG	15035	57.662064	28
GTATGCC	14945	56.852802	45
ACGTCTG	16390	56.72563	15
CGTATGC	15020	56.660786	44
CGCCAAT	15230	56.403625	33
CAGTCAC	15650	56.01313	27
GCCAATA	15500	55.421112	34
ATGCCGT	15580	54.470013	47
TCACGCC	15875	54.350193	30
CACGCCA	16005	53.994957	31
ATATCTC	15430	53.927975	38
CCAATAT	15895	53.82742	35
ACACGTC	17520	53.38142	13
CACGTCT	17455	53.34343	14
ACGCCAA	16505	52.379948	32