FastQCFastQC Report
Thu 16 May 2019
HFLLHBGXB_n02_ALm232.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFLLHBGXB_n02_ALm232.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14679348
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGA184400.011.1446982
CGGGGAT52900.010.407471
AAGGGGG156850.010.39381780-81
AGAGCGG53950.09.3268978
CGGGAAT28050.09.3062061
CCGGGAT43550.09.2634681
CGCGTAA6706.2992796E-58.5005941
AAAAGGG199400.08.49736478-79
GGGGGAG204250.08.3654483
CGCGGTG55800.08.3355591
GGGGAGA163950.08.3088324
GAGCGGG89350.08.2885389
GAGAGCG63650.08.1290647
ACGATCG12854.2382453E-108.125843
TAGGGGG49900.08.09072850-51
CTCGGAT36350.07.9646791
CGACCTA11603.8182407E-87.77436834
GCGTCGT116600.07.7035594-95
CGCCAAT20400.07.67762041
CGCGTTT10152.5179634E-67.481641
Produced by FastQC (version 0.11.5)