HFKW7BGX9_n01_NCR_084.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFKW7BGX9_n01_NCR_084.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3226747
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCCGAATCTCGTATGC	13292	0.41193189301795274	TruSeq Adapter, Index 6 (97% over 36bp)
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTACAGCTCGTCCTTCTT	5788	0.17937569942731796	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5226	0.16195877767919206	No Hit
CTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCA	4328	0.1341288920389482	No Hit
CGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACAACAGCCACAACG	4234	0.13121574142627235	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATCACTGGTGGACAGCAAAT	4198	0.13010006672354543	No Hit
CGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCG	3596	0.11144350641683404	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTC	3538	0.10964603050688511	No Hit
GGCGGATCTTGAAGTTCACCTTGATGCCGTTCTTCTGCTTGTCGGCCATG	3260	0.10103054252471606	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	2260	50.325676	44
TATGCCG	2285	50.236084	46
ACGTCTG	2465	49.830833	15
GTATGCC	2310	49.3894	45
TCGTATG	2275	48.917065	43
CTCGTAT	2325	47.414997	42
GCACACG	2595	47.200363	11
CACGTCT	2625	46.66021	14
ACTCCCG	2575	46.21221	32
AGCACAC	2690	45.663532	10
CCCGAAT	2610	45.5918	35
CACTCCC	2605	45.54637	31
CACACGT	2690	45.532734	12
GTCACTC	2610	45.32572	29
CAGTCAC	2635	45.161343	27
AGTCACT	2725	44.054413	28
ACACGTC	2850	43.0993	13
CCAGTCA	2795	42.700638	26
GCCGTCT	2590	42.158943	49
GAGCACA	2975	41.406677	9