HFKW7BGX9_n01_NCR_061.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFKW7BGX9_n01_NCR_061.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7772621
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG	22198	0.28559220885721814	No Hit
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	13832	0.17795798868875762	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAAT	11365	0.14621837344185443	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAG	11190	0.14396688066998248	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	11035	0.14197270135775306	No Hit
GCTTGATGTCGGTCTTGTAGGCGCCGGGCAGCTGCACGGGCTTCTTGGCC	9259	0.11912326614149849	No Hit
TGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGACTCCTCCCTG	9215	0.11855717653028496	No Hit
CCGTGACCCAGGACTCCTCCCTGCAGGACGGCGAGTTCATCTACAAGGTG	9124	0.11738640028891155	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAAC	9081	0.11683317635068018	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	8923	0.11480040001950437	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT	8818	0.1134495043563812	TruSeq Adapter, Index 18 (97% over 40bp)
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	8354	0.10747983209267506	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCCGC	1555	43.2145	33
GTCCGCA	1640	41.402077	34
CGTATGC	1715	38.976246	46
TCCGCAC	1730	38.842594	35
GTATGCC	1800	37.719227	47
CCGCACA	1780	37.358025	36
TATGCCG	1815	37.214676	48
CGCACAT	1835	36.238766	37
GTCACGT	2205	31.586823	29
AGTCACG	2205	31.586618	28
ATGCCGT	2175	31.215708	49
TCACGTC	2280	30.394472	30
TCGTATG	2230	30.288877	45
CTCGTAT	2180	29.859821	44
ACGTCTG	2375	29.470203	15
GCACACG	2485	28.447527	11
ACGTCCG	2475	27.433928	32
CACACGT	2595	27.376343	12
CTAGCAG	3270	26.220312	8
GCCGTCT	2565	26.196577	51