HFKW7BGX9_n01_NCR_059.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFKW7BGX9_n01_NCR_059.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8831827
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAAT	24697	0.2796363651597795	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCGCATCTCGTAT	19442	0.2201356525665641	TruSeq Adapter, Index 16 (97% over 39bp)
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG	16680	0.18886239506276561	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13208	0.14955003081468873	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTG	11651	0.1319206094050529	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAAC	11645	0.13185267329172096	No Hit
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	11359	0.12861438522289897	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	10267	0.11625001259648769	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAG	9071	0.10270808067232295	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCCGC	2840	52.49891	35
CCCGTCC	2935	50.801067	33
GTCCGCA	2990	49.63192	36
CGTATGC	3055	49.14402	46
CCGTCCG	3045	48.850388	34
TATGCCG	3115	47.97273	48
GTATGCC	3170	47.471592	47
CTCGTAT	3460	42.98776	44
GCACACG	3670	42.432526	11
ATGCCGT	3555	42.132664	49
ACGTCTG	3685	41.974903	15
TCGTATG	3820	39.66926	45
CACACGT	3950	39.070267	12
CGCATCT	3770	38.712067	39
CACGTCT	4180	37.004192	14
AGCACAC	4300	36.866737	10
TCCGCAT	4095	36.41012	37
AGTCACC	4200	35.74946	28
GCCGTCT	4200	35.66249	51
CATCTCG	4120	35.337868	41