HFKN2BGX9_n01_NCR6_046.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFKN2BGX9_n01_NCR6_046.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8907699
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG	22215	0.24939100434354594	No Hit
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	16502	0.18525547394450576	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAAT	14126	0.15858191885468964	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAG	11702	0.13136950406608935	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC	11002	0.1235111334588203	TruSeq Adapter, Index 3 (100% over 50bp)
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	9736	0.10929870890338796	No Hit
GCTTGATGTCGGTCTTGTAGGCGCCGGGCAGCTGCACGGGCTTCTTGGCC	9734	0.10927625641593862	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAAC	9447	0.1060543244669583	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	9122	0.10240579525644053	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	2190	39.79453	44
TATGCCG	2280	37.916676	46
GTATGCC	2365	37.44187	45
CACTTAG	2440	37.007584	31
GCACACG	2495	36.612206	11
CTCGTAT	2490	34.2972	42
ACGTCTG	2650	34.206406	15
TAGGCAT	2590	33.377262	35
TTAGGCA	2725	32.879635	34
CACACGT	2800	32.8739	12
TCGTATG	2695	32.727463	43
ATGCCGT	2685	32.45811	47
AGCACAC	3080	30.22643	10
TCACTTA	3030	29.801485	30
CACGTCT	3095	29.401278	14
ACACGTC	3295	27.829115	13
GCCGTCT	3180	27.515419	49
CTAGCAG	4040	26.682425	8
CATCTCG	3180	26.414803	39
GGCATCT	3220	26.194921	37