FastQCFastQC Report
Wed 7 Nov 2018
HFKMCBGX9_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFKMCBGX9_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences255127454
Sequences flagged as poor quality0
Sequence length8
%GC84

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGG17331874467.9341800667207No Hit
AGATCTCG7889837330.92508146928006Illumina Single End PCR Primer 1 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)