HFKMCBGX9_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFKMCBGX9_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	255127454
Sequences flagged as poor quality	0
Sequence length	50
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	8281172	3.245896068872306	No Hit
CTGTCTCTTATACACATCTGCCGTCCTCGATCGCATTACTCGCCTGTCCC	949349	0.3721077387461406	No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA	404632	0.15859994432429841	No Hit
GATATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAATGG	378297	0.14827765262769407	No Hit
CCCAAGAACAGGGTTTGTTAAGATGGCAGAGCCCGGTAATCGCATAAAAC	290367	0.11381252603257663	No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTAC	273226	0.10709392333762716	No Hit
CCCCATTCCTCCCCACACTCATCGCCCTTACCACGCTACTCCTACCTATA	261287	0.10241430152005515	No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTAT	256005	0.10034396376643966	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATTA	107015	42.151867	32
TCGATCG	116390	40.14723	27
GATCGCA	116220	38.937897	29
TCCTCGA	120620	38.836918	24
CTCGATC	124830	37.649467	26
TACTCGC	120450	37.248093	37
GTCCTCG	126260	37.19054	23
TAGCGTG	50030	37.050266	15
TCGCATA	35965	37.016026	40
CGATCGC	126425	36.961933	28
ACTCGCC	123110	36.462803	38
CGGTAAT	37770	35.924316	34
CGTCCTC	133360	35.50005	22
GCATTAC	127150	35.486378	33
CGTGGTA	52405	35.36722	18
CTTGAAA	170565	34.971775	44
CCGGTAA	39530	34.257523	33
TCGCCTG	131655	34.21163	40
TCGCATT	133325	34.03625	31
CCCGGTA	40040	33.732433	32