FastQCFastQC Report
Tue 31 Jan 2017
HFKCHAFXX_n01_vs5_170124.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFKCHAFXX_n01_vs5_170124.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8077810
Sequences flagged as poor quality0
Sequence length50
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG8709.094947E-127.0825555
TAGGGGG4202.7119782E-46.8115394
TGGGGGG9101.8189894E-106.5294045
Produced by FastQC (version 0.11.2)