FastQCFastQC Report
Thu 6 Dec 2018
HFJMNBGX9_n01_10x_ctr_dec18_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFJMNBGX9_n01_10x_ctr_dec18_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65107709
Sequences flagged as poor quality0
Sequence length27
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGCGGA247600.019.2375681
TGACGGC187000.018.7275941
ATTGGAC371800.018.6745971
TGGACGC215800.018.6612911
GGATTAC285250.018.5685161
GGGAATG246200.018.3019871
AAATGCC331200.018.2815111
CACTGCC210950.018.2618568
TGCTACC245400.018.2375561
CACCGAA187350.018.1588
ATAACGC201350.018.0917431
GACTAAC226350.018.0698571
GTCGACT177100.018.0587658
ACACTGA276000.018.0418151
GCGCGAT172650.018.0337451
ATCGAGT256050.017.9465221
CGGCCGA151650.017.9253259
CCGTGGA171100.017.792051
GCACTGC192000.017.785027
CTCGAGG199000.017.767151
Produced by FastQC (version 0.11.5)