HFJM7BGXC_n01_S_6.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_6.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19389122
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	46392	0.23926818346906065	No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA	32607	0.16817161705413994	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	28745	0.14825323188951	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	25765	0.13288378916796748	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	24908	0.12846378500274536	No Hit
GCCACCCCACTCTTAATCAGTGGTGGAAGAACGGTCTCAGAACTGTTTGT	21538	0.11108290514650432	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	21269	0.10969552927667378	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCCGACG	4820	38.158585	41
GCGTTCT	4440	37.06127	10
CGGAGCG	4610	35.934578	6
GAGCGTT	4590	35.85021	8
TTCCGAC	5080	35.20977	40
CGACGGC	5210	35.006233	43
TCGGAGC	4750	34.50466	5
GAATCGC	14405	34.50214	25
AGAATCG	14875	34.210594	24
AATCGCT	14480	34.186337	26
TACTTCG	5605	33.95141	17
CTACTCG	19425	33.862988	2
TACTCGG	19520	33.56294	3
GCACTTT	37770	33.486385	1
TTCGAGT	5725	33.47154	20
AGGCTGA	85765	33.10917	11
CTACTTG	21930	33.034534	2
TCGCTTG	16510	32.927666	28
GCTACTT	22835	32.824192	1
CGCTTGA	16225	32.77383	29