HFJM7BGXC_n01_S_5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11072457
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	27138	0.2450946524335114	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26791	0.24196074999433279	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	23991	0.2166727764217102	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	23623	0.21334921418073696	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	15802	0.1427144851409222	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	15607	0.1409533584099717	No Hit
AATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAACGGTCTCAGAAC	13973	0.1261960195465198	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTCTACCAATCTCGTATGCC	12366	0.11168252899966107	No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA	11963	0.10804286708903002	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTCT	3525	38.630474	10
CGGAGCG	3615	37.794014	6
TCGGAGC	3720	36.845364	5
CGTTCTC	3745	36.771988	11
GACACGT	2950	36.394318	21
GAGCGTT	3755	36.382122	8
ATACCGC	1090	35.72569	35
CGGCCTA	3095	35.6103	10
TATACCG	1110	35.081665	34
GCGACGT	1265	34.95426	13
CTACTCG	5570	34.482033	2
GAATCGC	4990	34.390747	25
AGACACG	3170	34.214615	20
TCCGACG	1835	34.048687	41
TTCGGAG	4100	33.913372	4
GTCGAAT	1330	33.90789	10
ACGTGCC	3105	33.79873	24
CCTTCGG	4135	33.785633	2
TACTCGG	5670	33.641075	3
GTCCTAC	4080	33.484943	19