HFJM7BGXC_n01_S_4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10041854
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	26437	0.2632681176205111	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	25513	0.2540666295287703	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	20332	0.20247257130008067	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	20066	0.1998236580615492	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	16474	0.164053371020929	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	16270	0.16202187365002518	No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA	10998	0.1095216082607853	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCGTT	3655	39.12267	8
GCGTTCT	3770	37.69567	10
TCGGAGC	3830	37.16628	5
CGGAGCG	3815	37.139587	6
CGTTCTC	3955	36.210526	11
GACACGT	2680	36.03833	21
AGACACG	2785	35.07407	20
TCCGACG	1800	34.711224	41
CGGCCTA	2875	34.203457	10
TTCGGAG	4195	33.93233	4
CTACTCG	3580	33.80017	2
TATACCG	985	33.725494	34
GTCCTAC	4190	33.603764	19
ACGTGCC	2840	33.5437	24
ATACCGC	995	33.38721	35
CCTTCGG	4310	33.077827	2
TGGGTCG	2945	33.020264	5
CGTGATA	2870	32.885616	22
GGAGCGT	4335	32.884285	7
GAATCGC	3200	32.795162	25