HFJM7BGXC_n01_S_3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6271747
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	20010	0.31904985963241184	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	11621	0.185291275301762	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	11195	0.17849890947450528	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCCTCAATATCTCGTATGCC	10730	0.1710847073391194	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	9091	0.14495163787697432	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	8992	0.14337313032556956	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	7432	0.11849967800040404	No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA	6398	0.10201304357462122	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTCT	1655	37.21842	10
GAGCGTT	1695	36.989334	8
CGGAGCG	1680	36.666622	6
TCCGACG	1015	36.414036	41
GACACGT	1555	35.937366	21
CGGCCTA	1600	35.335484	10
TCGGAGC	1755	35.099667	5
CGACGGC	1050	34.990433	43
CGTTCTC	1805	34.490555	11
ATACCGC	520	34.270008	35
TTCGGAG	1830	33.66116	4
CTACTCG	4265	33.528145	2
TACTCGG	4290	33.435585	3
AATCGCT	3600	33.42907	26
TATACCG	535	33.30917	34
ACACGTG	1690	33.19602	22
TTCGAGT	1160	33.19014	20
AGACACG	1720	33.12839	20
TTCCGAC	1100	33.001537	40
GAATCGC	3615	32.925724	25