HFJM7BGXC_n01_S_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10278302
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	27483	0.2673885239020998	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	23202	0.2257376753475428	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	22746	0.22130114487782124	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	22508	0.21898558730809817	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	21711	0.2112313882195717	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	13544	0.13177273833751918	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	12135	0.11806424835541901	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	11420	0.11110784641276351	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGGAGC	3385	39.126488	5
GCGTTCT	3385	38.86386	10
GAGCGTT	3475	38.300835	8
CGTTCTC	3470	38.22867	11
GACACGT	3535	38.088787	21
ATACCGC	1270	37.937176	35
CGGAGCG	3525	37.635124	6
AGACACG	3655	37.01867	20
CGGCCTA	3735	36.871193	10
TATACCG	1320	36.499805	34
ATGCGCC	3350	35.988045	31
ACGTGCC	3690	35.773907	24
CTACTCG	7380	35.147007	2
ACACGTG	3850	34.68688	22
GTCGAAT	1615	34.599087	10
TACTCGG	7695	34.365826	3
GTCCTAC	3825	34.337574	19
TTCGGAG	3885	34.31742	4
TCCGACG	1155	34.095055	41
CGGAACT	1685	33.94723	2