HFJM7BGXC_n01_S_20.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_20.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11276232
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCTTATACACATCTCCGAGCCCACGAGACACGTTCGAATCTCGTATGCC	33469	0.2968101401248219	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26930	0.23882091109867198	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACACGTTCGAATCTCGTATGC	19210	0.17035832536968024	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	17353	0.15389005831025823	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	13579	0.12042143155621488	No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA	12301	0.10908785842646729	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	12194	0.10813895989369499	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	11619	0.10303973880636723	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCCGACG	1860	36.783875	41
GAGCGTT	1970	35.39904	8
GTATGCC	6785	35.049515	44
TCGGAGC	1995	33.745327	5
CTACTCG	6890	33.40008	2
TTCCGAC	1990	33.276447	40
GCGTTCT	2040	33.21354	10
CGACGGC	2075	33.184578	43
TACTTCG	2165	33.02503	17
TACTCGG	6990	32.859306	3
AGGCTGA	33900	32.34894	11
GAATCGC	5925	32.194324	25
GCGACGT	890	32.133183	13
CGGAGCG	2100	32.058056	6
AGAATCG	6015	32.005234	24
GCTACTC	14900	31.908293	1
AATCGCT	5965	31.6828	26
GCACTTT	16525	31.57972	1
TGCGCGA	900	31.534235	4
CGGATCA	3995	31.336033	24