HFJM7BGXC_n01_S_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7861728
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	24152	0.307209814432654	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	22906	0.29136088147542116	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	18593	0.23650016891960646	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	18248	0.23211182070913672	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	18215	0.23169206566291786	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	12691	0.16142761489586005	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	11084	0.14098681612999076	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	9263	0.11782396948864168	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTCT	3225	40.51856	10
CGTTCTC	3320	39.955494	11
CGGAGCG	3365	39.881077	6
TCGGAGC	3410	39.225754	5
GAGCGTT	3440	39.00959	8
CGGCCTA	2865	37.931465	10
GACACGT	2705	37.819767	21
GTCCTAC	3575	37.292736	19
ATACCGC	1025	37.132133	35
TATACCG	1030	36.951878	34
AGACACG	2805	36.706768	20
TTCGGAG	3735	36.16595	4
ACGTGCC	2840	35.945442	24
ACACGTG	2855	35.602013	22
ATGCGCC	2645	35.43262	31
CACGTGC	2905	35.14071	23
CCTTCGG	3865	35.063343	2
GGAGCGT	3880	34.98271	7
GTCGAAT	1240	34.77216	10
TCCGACG	1295	34.656544	41