HFJM7BGXC_n01_S_19.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_19.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8524946
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCTTATACACATCTCCGAGCCCACGAGACCAGAACTGATCTCGTATGCC	23524	0.27594309688295976	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	19961	0.23414811073290084	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	17544	0.20579602498361865	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACCAGAACTGATCTCGTATGC	12767	0.14976047942121862	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	11438	0.13417093785696707	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	11213	0.13153162495105541	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAGAACTGCTCTCGTATGCC	10838	0.1271327701078693	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	10661	0.12505651062188547	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	9678	0.11352564579294695	No Hit
GGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGC	8912	0.10454025163326548	No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA	8907	0.10448160023535634	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCCGACG	1485	36.294537	41
GAGCGTT	1780	35.47019	8
GTATGCC	6070	35.37267	44
GACACGT	1585	34.423668	21
GCGTTCT	1765	34.150917	10
GAATCGC	3740	33.944305	25
TCGGAGC	1770	33.561237	5
CGACGGC	1595	33.378082	43
TGCGCGA	810	33.137695	4
TACTTCG	1675	33.096706	17
CTACTCG	4220	33.053825	2
TACTCGG	4335	33.039753	3
AGAATCG	3950	32.919495	24
CGGAGCG	1795	32.726482	6
ATTCGAC	540	32.590824	16
GCGACGT	840	32.474236	13
TTCCGAC	1585	32.340073	40
CGTGATA	2035	32.3256	22
AGACACG	1705	32.258015	20
AATCGCT	3975	32.21335	26