HFJM7BGXC_n01_S_17.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_17.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12884149
Sequences flagged as poor quality	0
Sequence length	50
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCTTATACACATCTCCGAGCCCACGAGACGTCTACCAATCTCGTATGCC	61704	0.478914051676987	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	41428	0.3215423851431709	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	41120	0.31915185085177145	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	35306	0.2740266353641207	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTCTACCACTCTCGTATGCC	30014	0.23295290981189365	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACGTCTACCAATCTCGTATGC	27757	0.2154352607999178	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	16788	0.13029964183121445	No Hit
TCTGGTTAGATTGTTTTCACTTGGTGATCATGTCTTTTCCATGTGTACCT	16016	0.12430778315277166	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACGTCTACCACTCTCGTATGC	15254	0.11839353922404965	No Hit
CAATAAAGCTTGCCTTGAGTGCTTCAAAAAAAAAAAAAAAAAAAAAAAAA	14264	0.11070967900169426	No Hit
GATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACA	13674	0.10613040876816932	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTACTCG	5630	38.919296	2
GTATGCC	14415	38.611492	44
TACTCGG	5745	37.56598	3
GCTACTC	11965	36.993977	1
GCCTACG	2110	36.073994	8
TCCGACG	470	35.573765	41
GCGGTTA	715	35.078403	29
CCTACGT	2155	35.01446	9
TCACGGG	2035	34.59404	3
TCGCCGA	720	34.222076	6
CTCACGG	2110	34.198376	2
CGCATAC	465	34.06556	35
AGGCTGA	25550	33.691044	11
CACGGGC	2080	33.63434	4
ACGGGCA	2105	33.13037	5
CTCGGGA	6835	32.99168	5
ACTCGGG	6580	32.899426	4
CCGTAAC	1465	32.88672	41
TCGGGAG	7240	32.81754	6
CGTAACC	1435	32.807457	42