HFJM7BGXC_n01_S_16.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_16.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9847128
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	33426	0.3394492282419808	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	28186	0.28623574305117183	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	19311	0.1961079413205556	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	16117	0.16367208794279914	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	14331	0.14553481989875627	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTATCCGATCTCGTATGCC	13149	0.13353131999502799	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	12193	0.12382290552128498	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	11521	0.1169985807029217	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGAGCG	1750	37.464237	6
CTACTCG	6930	35.938194	2
TCGGAGC	1820	35.902603	5
CGTTCTC	1885	35.828465	11
CGCATAC	200	35.20094	35
GAGCGTT	1875	35.198437	8
GCGTTCT	1875	35.198257	10
GCTACTC	14325	35.094322	1
TACTCGG	7215	35.006496	3
GCGACGT	460	34.433075	13
CTACTTG	7770	34.233265	2
CGGCCTA	1980	34.109425	10
AGGCTGA	29710	33.890614	11
GAATCGC	5215	33.66567	25
GCTACTT	8225	33.623634	1
AGACACG	1945	33.59353	20
AGAATCG	5495	33.27113	24
ACGTGCC	1940	33.22769	24
CGTACTA	590	33.18547	42
GACACGT	1970	33.167725	21