HFJM7BGXC_n01_S_15.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_15.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10030662
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	35531	0.35422387874299827	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	28229	0.28142708826197116	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26384	0.2630334867230099	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	21043	0.20978675186144247	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	17803	0.1774857930613154	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	17789	0.1773462210171173	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	15392	0.15344949316406037	No Hit
CCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGG	13773	0.13730898319572526	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCCTCAATATCTCGTATGCC	11917	0.11880571790775125	No Hit
GCAAATGCCAGGTCTAGCAAACATAATGCTAGTCCTAGATTACTTATTGA	11192	0.1115778799046364	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGAGCG	2660	38.956028	6
TCGGAGC	2770	37.56751	5
AGACACG	2700	37.40035	20
GCGTTCT	2755	37.370346	10
GAGCGTT	2815	37.3555	8
CGTTCTC	2780	37.351	11
CGGAACT	1020	36.667374	2
GACACGT	2730	36.586605	21
ACGTGCC	2755	36.095245	24
CGGCCTA	2950	34.900105	10
CTACTCG	4575	34.62362	2
TACCGAT	465	34.538986	25
TCCGACG	910	34.329647	41
ATGCGCC	2615	34.241405	31
GCTACTC	9935	33.482277	1
TTCGGAG	3115	33.47737	4
GGTCGCT	2450	33.40273	7
ACACGTG	3010	33.402134	22
TACTCGG	4745	33.336784	3
TAAGCGC	590	33.18559	17