HFJM7BGXC_n01_S_13.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_13.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10295966
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	28642	0.27818662182839377	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	23593	0.2291479983519759	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	21008	0.20404107783572714	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	17207	0.16712370650796635	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCTGGTAATCTCGTATGCC	16958	0.16470528360330638	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	15976	0.15516756756966757	No Hit
GCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGA	13221	0.12840951494983568	No Hit
ACTGTGGAGGAAGGATTGTAAAAAAAAATGCCTTTGAGACAGTTTCTTAG	10971	0.10655629593182417	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGAGCG	2525	38.511467	6
GCGTTCT	2590	37.287594	10
GAGCGTT	2615	37.015602	8
TCGGAGC	2635	36.987267	5
CGTTCTC	2645	36.34572	11
GACACGT	2560	35.922935	21
AGACACG	2640	35.25087	20
CTACTCG	3645	35.067398	2
TCCGACG	1100	34.79984	41
CGGCCTA	2780	34.02697	10
CGGAACT	1285	33.556595	2
ACACGTG	2765	33.338654	22
ACGTGCC	2770	33.27977	24
TCCGAAG	1240	33.1784	21
TACTCGG	3855	33.15727	3
CGTACTA	480	32.99953	42
TTCGGAG	2985	32.945213	4
GCTACTC	7895	32.463913	1
GTCGAAT	1305	32.366096	10
TGCCGTA	890	32.135155	39