HFJM7BGXC_n01_S_12.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_12.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10603993
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	23794	0.22438717188892904	No Hit
GACAGAAATCAGGTATTGGCAGTTTTTCCATTTTCATTTGTGTGTGAATT	16761	0.1580630994381079	No Hit
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	15545	0.14659572106469704	No Hit
GCCCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGA	14271	0.134581378920186	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	12771	0.12043576415035355	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTAGCCTCATCTCGTATGCC	12649	0.11928525414907384	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	11672	0.11007174372898963	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCCGACG	1540	37.285503	41
CGGAGCG	2065	36.011177	6
GAGCGTT	2165	35.361385	8
CGACGGC	1600	35.199966	43
GTCGAAT	950	35.19847	10
TCGGAGC	2185	34.335197	5
CTACTCG	2905	34.23141	2
TTCCGAC	1650	33.467266	40
GCGTTCT	2250	33.43855	10
TACTTCG	1820	32.87816	17
CGGAACT	1020	32.785057	2
TACTCGG	3025	32.72817	3
GAATCGC	2460	31.481426	25
TGCCGTA	1790	31.464697	39
CGTTCTC	2400	31.440006	11
CCTTCGG	2425	31.208952	2
ATACCGC	960	31.166931	35
TATACCG	980	30.755362	34
TTCGGAG	2430	30.69234	4
AGGCTGA	15655	30.156185	11