HFJM7BGXC_n01_S_10.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HFJM7BGXC_n01_S_10.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7162386
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGC	20210	0.28216853992510316	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17936	0.2504193434981024	No Hit
GCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAA	15285	0.2134065379888769	No Hit
GCCCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGA	14268	0.19920735911189372	No Hit
CTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAA	13983	0.1952282381876654	No Hit
GCCTTCGGAGCGTTCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACC	13767	0.19221248338193447	No Hit
GACAGAAATCAGGTATTGGCAGTTTTTCCATTTTCATTTGTGTGTGAATT	13612	0.19004840007226642	No Hit
GCTAAAGGGGAGAAACTGAAAGTGTTTTACTCTTTTTCTAAAGTGTTGGT	9888	0.13805455332901634	No Hit
CAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCG	8664	0.12096527609654101	No Hit
GCAGGAAGGGGGGTCGCCGTGGTCGCCGTCTGTGAACAAGATTCCTCAAA	7916	0.11052182889891721	No Hit
GCTGGCCCAAGGTGTCCTGCAGGCTGTAATGCAGTTTAATCAGAGTGCCA	7359	0.10274509081191659	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGACACG	2325	38.51319	20
GACACGT	2330	38.148075	21
ATACCGC	895	37.608696	35
ACGTGCC	2410	36.97433	24
GTCGAAT	1040	36.8054	10
GCGTTCT	1795	36.76651	10
CGGAGCG	1825	36.647106	6
TATACCG	910	36.505512	34
CGGAACT	1055	36.284885	2
GAGCGTT	1885	36.06217	8
ACACGTG	2475	35.6467	22
CGAATGA	1080	35.442238	12
TCGGAGC	1905	35.108116	5
CGTTCTC	1900	34.966244	11
CGGCCTA	2715	34.76026	10
ACCTGCG	2640	34.7505	5
ATGCGCC	2415	34.707848	31
CACGTGC	2575	34.604374	23
CCTTCGG	2010	34.14975	2
TGCCGTA	890	34.112614	39